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Commensal consortia decolonize Enterobacteriaceae via ecological control
Munehiro Furuichi, Takaaki Kawaguchi, Marie-Madlen Pust, Keiko Yasuma-Mitobe, Damian R. Plichta,Naomi Hasegawa, Takashi Ohya, Shakti K. Bhattarai, Satoshi Sasajima, Yoshimasa Aoto, Timur Tuganbaev, Mizuki Yaginuma, Masahiro Ueda, Nobuyuki Okahashi, Kimiko Amafuji, Yuko Kiridoshi, Kayoko Sugita,Martin Stražar, Julian Avila-Pacheco, Kerry Pierce, Clary B. Clish, Ashwin N. Skelly, Masahira Hattori,Nobuhiro Nakamoto, Silvia Caballero, Jason M. Norman, Bernat Olle, Takeshi Tanoue, Wataru Suda, Makoto Arita, Vanni Bucci, Koji Atarashi, Ramnik J. Xavier, Kenya Honda
Nature. 2024 Sep;633(8031):878-886. doi: 10.1038/s41586-024-07960-6. Epub 2024 Sep 18.
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Periportal macrophages protect against commensal-driven liver inflammation
Yu Miyamoto, Junichi Kikuta, Takahiro Matsui, Tetsuo Hasegawa, Kentaro Fujii, Daisuke Okuzaki, Yu-Chen Liu, Takuya Yoshioka, Shigeto Seno, Daisuke Motooka, Yutaka Uchida, Erika Yamashita, Shogo Kobayashi, Hidetoshi Eguchi, Eiichi Morii, Karl Tryggvason, Takashi Shichita, Hisako Kayama, Koji Atarashi, Jun Kunisawa, Kenya Honda, Kiyoshi Takeda, Masaru Ishii
Nature. 2024 May;629(8013):901-909. doi: 10.1038/s41586-024-07372-6. Epub 2024 Apr 24.
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Rationally-defined microbial consortia suppress multidrug-resistant proinflammatory Enterobacteriaceae via ecological control
Kenya Honda, Munehiro Furuichi, Takaaki Kawaguchi, Marie-Madlen Pust, Keiko Yasuma-Mitobe, Damian Plichta, Naomi Hasegawa, Takashi Ohya, Shakti Bhattarai, Satoshi Sasajima, Aoto Yoshimasa, Timur Tuganbaev, Mizuki Yaginuma, Masahiro Ueda, Nobuyuki Okahashi, Kimiko Amafuji, Yuuko Kiridooshi, Kayoko Sugita, Martin Stražar, Ashwin Skelly, Wataru Suda, Masahira Hattori, Nobuhiro Nakamoto, Silvia Caballero, Jason Norman, Bernat Olle, Takeshi Tanoue, Makoto Arita, Vanni Bucci, Koji Atarashi, Ramnik Xavier
Res Sq [Preprint]. 2023 Oct 23:rs.3.rs-3462622. doi: 10.21203/rs.3.rs-3462622/v1.
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D-amino Acids Ameliorate Experimental Colitis and Cholangitis by Inhibiting Growth of Proteobacteria: Potential Therapeutic Role in Inflammatory Bowel Disease
Satoko Umeda, Tomohisa Sujino, Kentaro Miyamoto, Yusuke Yoshimatsu, Yosuke Harada, Keita Nishiyama, Yoshimasa Aoto, Keika Adachi, Naoki Hayashi, Kimiko Amafuji, Nobuko Moritoki, Shinsuke Shibata, Nobuo Sasaki, Masashi Mita, Shun Tanemoto, Keiko Ono, Yohei Mikami, Jumpei Sasabe, Kaoru Takabayashi, Naoki Hosoe, Toshihiko Suzuki, Toshiro Sato, Koji Atarashi, Toshiaki Teratani, Haruhiko Ogata, Nobuhiro Nakamoto, Daisuke Shiomi, Hiroshi Ashida, Takanori Kanai
Cell Mol Gastroenterol Hepatol. 2023;16(6):1011-1031. doi: 10.1016/j.jcmgh.2023.08.002. Epub 2023 Aug 9.
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Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan
Joachim Johansen, Koji Atarashi, Yasumichi Arai, Nobuyoshi Hirose, Søren J Sørensen, Tommi Vatanen, Mikael Knip, Kenya Honda, Ramnik J Xavier, Simon Rasmussen, Damian R Plichta
Nat Microbiol. 2023 Jun;8(6):1064-1078. doi: 10.1038/s41564-023-01370-6. Epub 2023 May 15.
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Diet-mediated constitutive induction of novel IL-4+ ILC2 cells maintains intestinal homeostasis in mice
Wanlin Cui, Yuji Nagano, Satoru Morita, Takeshi Tanoue, Hidehiro Yamane, Keiko Ishikawa, Toshiro Sato, Masato Kubo, Shohei Hori, Tadatsugu Taniguchi, Masanori Hatakeyama, Koji Atarashi, Kenya Honda
J Exp Med. 2023 Aug 7;220(8):e20221773. doi: 10.1084/jem.20221773. Epub 2023 May 10.
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An old model with new insights: endogenous retroviruses drive the evolvement toward ASD susceptibility and hijack transcription machinery during development
Chia-Wen Lin, Jacob Ellegood, Kota Tamada, Ikuo Miura, Mikiko Konda, Kozue Takeshita, Koji Atarashi, Jason P Lerch, Shigeharu Wakana, Thomas J McHugh, Toru Takumi
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Myeloid-like B cells boost emergency myelopoiesis through IL-10 production during infection
Masashi Kanayama, Yuta Izumi, Megumi Akiyama, Toyoki Hayashi, Koji Atarashi, Axel Roers, Taku Sato, Toshiaki Ohteki
J Exp Med. 2023 Apr 3;220(4):e20221221. doi: 10.1084/jem.20221221. Epub 2023 Jan 31.