To update your SraTailor immediately, open the Terminal.app, and enter the following command.<\/p>\n
curl http:\/\/devbio.med.kyushu-u.ac.jp\/SraTailor\/update.sh| sh<\/span><\/p>\n A dialog will ask you whether to update your SraTailor. – (Only for Mac) A small bug was fixed.<\/p>\n – Changed for dowloading SRAs due to the absence of ByExp directory.<\/p>\n – http URLs of NCBI have been changed to https.<\/p>\n – Broken link to SRA Toolkit has been fixed.<\/p>\n – Broken link to BedTools has been fixed.<\/p>\n – (Only for Mac) Executable on macOS Sierra.<\/p>\n – Broken links hve been fixed (Bowtie, SAMTools, IGV, UCSC tools, and BWA)<\/p>\n – Link to ChIP-Atlas<\/a> is added. – MACS2 installataion on Python 2.7.10 or later. – BED features extending chromosome sizes are trimmed.<\/p>\n – (Only for Ubuntu) Installation of yad (with -y) and md5 for twoBitToFa and bedGraphToBigWig.<\/p>\n – (Only for Mac) Installation of MACS2 with the latest Python.<\/p>\n – Downloading CLI tools becomes more robust when the server is unstable.<\/p>\n – Downloading CLI tools becomes more robust when the server is unstable.<\/p>\n – Path to input file, save directory or control BAM can include symbols.<\/p>\n – Path to input file, save directory or control BAM can include spaces.<\/p>\n – (Only for Mac) GUI is compatible with Mac OS 10.10 (Yosemite).<\/p>\n – Share button on main menu.<\/p>\n – SraTailor on Windows. – The URL of MACS download has been changed. – A mapping tool, Bowtie, has been replaced with Bowtie2. – A bug that bowtie is executed two times is fixed.<\/p>\n – automatically checks SraTailor’s update.<\/p>\n – More robust installation of CLI tools at the initial settings of SraTailor. – Accession numbers beginning with SRX, DRX or ERX are acceptable as well as those with GSM. See the manual<\/a> (\u00a74. FAQs Q10 at pp18). – The first public release of the SraTailor.<\/p>\n","protected":false},"excerpt":{"rendered":" SraTailor is no longer managed. Thank you for using the service. Update your SraTailor. To update your SraTailor immediately, open the Terminal.app, and enter the following command. curl http:\/\/devbio.med.kyushu-u.ac.jp\/SraTailor\/update.sh| sh A dialog will ask you whether to update your SraTailor. Click “Update Now” button; automatic update will be completed within a few seconds. ChangeLog SraTailor 1.0.7 (November 11, 2017)\u00a0Latest! – (Only for Mac) A small bug was fixed. SraTailor 1.0.6 (November 06, 2017) – Changed for dowloading SRAs due to the absence of ByExp directory. SraTailor 1.0.5 (November 10, 2016) – http URLs of NCBI have been changed to https. SraTailor 1.0.4 (November 09, 2016) – Broken link to SRA…\u7d9a\u304d\u3092\u8aad\u3080<\/a><\/p>\n","protected":false},"author":20,"featured_media":0,"parent":147,"menu_order":12,"comment_status":"open","ping_status":"closed","template":"page_sra_tailor.php","meta":{"footnotes":""},"class_list":["post-155","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.lab.med.kyushu-u.ac.jp\/devbio\/wp-json\/wp\/v2\/pages\/155","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.lab.med.kyushu-u.ac.jp\/devbio\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.lab.med.kyushu-u.ac.jp\/devbio\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.lab.med.kyushu-u.ac.jp\/devbio\/wp-json\/wp\/v2\/users\/20"}],"replies":[{"embeddable":true,"href":"https:\/\/www.lab.med.kyushu-u.ac.jp\/devbio\/wp-json\/wp\/v2\/comments?post=155"}],"version-history":[{"count":52,"href":"https:\/\/www.lab.med.kyushu-u.ac.jp\/devbio\/wp-json\/wp\/v2\/pages\/155\/revisions"}],"predecessor-version":[{"id":37971,"href":"https:\/\/www.lab.med.kyushu-u.ac.jp\/devbio\/wp-json\/wp\/v2\/pages\/155\/revisions\/37971"}],"up":[{"embeddable":true,"href":"https:\/\/www.lab.med.kyushu-u.ac.jp\/devbio\/wp-json\/wp\/v2\/pages\/147"}],"wp:attachment":[{"href":"https:\/\/www.lab.med.kyushu-u.ac.jp\/devbio\/wp-json\/wp\/v2\/media?parent=155"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}
\nClick “Update Now” button; automatic update will be completed within a few seconds.<\/p>\nChangeLog<\/h3>\n
SraTailor 1.0.7 (November 11, 2017)\u00a0Latest!<\/strong><\/h2>\n
SraTailor 1.0.6 (November 06, 2017)<\/h2>\n
SraTailor 1.0.5 (November 10, 2016)<\/h2>\n
SraTailor 1.0.4 (November 09, 2016)<\/h2>\n
SraTailor 1.0.3 (October 05, 2016)<\/h2>\n
SraTailor 1.0.2 (September 23, 2016)<\/h2>\n
SraTailor 1.0.1 (June 28, 2016)<\/h2>\n
SraTailor 1.0.0 (December 06, 2015)<\/h2>\n
\n– Fixed for installation of Xcode Command line tools.<\/p>\nSraTailor Beta 5.6.1 (October 24, 2015)<\/h2>\n
\n– Peak models for MACS\/MACS2 peak-calling.<\/p>\nSraTailor Beta 5.6 (July 9, 2015)<\/h2>\n
SraTailor Beta 5.5.1 (April 15, 2015)<\/h2>\n
SraTailor Beta 5.5.1 (January 19, 2015)<\/h2>\n
SraTailor Beta 5.5 (January 19, 2015)<\/h2>\n
SraTailor Beta 5.4 (December 4, 2014)<\/h2>\n
SraTailor Beta 5.3 (November 7, 2014)<\/h2>\n
SraTailor Beta 5.2 (October 30, 2014)<\/h2>\n
SraTailor Beta 5.1.1 (October 23, 2014)<\/h2>\n
SraTailor Beta 5.1 (September 18, 2014)<\/h2>\n
SraTailor Beta 5.0 (September 11, 2014)<\/h2>\n
\n– SAM and BAM files are acceptable as input.
\n– Additional tools:
\nFastQC (Quality checker for Fastq)
\nBowtie and BWA (Mapping tools)
\nMACS2 (Peak-caller)<\/p>\nSraTailor Beta 4.1 (June 26, 2014)<\/h2>\n
\n– “Add Genome” action has been improved for unstable internet connection.<\/p>\nSraTailor Beta 4.0 (May 12, 2014)<\/h2>\n
\n– Subtle changes in “Make BigWig” window graphics.<\/p>\nSraTailor Beta 3.2 (May 9, 2014)<\/h2>\n
SraTailor Beta 3.1 (February 23, 2014)<\/h2>\n
SraTailor Beta 3 (February 20, 2014)<\/h2>\n
\n– Compatible with the latest Aspera Connect (Ver 3.3.3).
\n– Improvement of “Make BigWig” action with multi-threaded SAMtools (with -@ option).<\/p>\nSraTailor Beta 2 (January 16, 2014)<\/h2>\n
\n– Capable of sequential submissions. See the manual<\/a> (\u00a72.5. at pp13).<\/p>\nSraTailor Beta 1 (August 9, 2013)<\/h2>\n