Main function of SraTailor is to convert\u00a0SRAs<\/strong>\u00a0into\u00a0BigWig<\/strong>\u00a0files. Much simple usage is one of the most remarkable features of SraTailor.\u00a0For example, SraTailor makes BigWig file\u00a0only by entering an accession number of SRA of\u00a0published ChIP-seq data.\u00a0<\/span>Resultant BigWig file allows you to view the protein occupancy at the genomic position of interest (<\/span>Video\u00a0<\/em>2<\/a>). Setup of SraTailor is much easy and simple (Video<\/em> <\/span>3<\/a>).<\/p>\n As input,\u00a0SraTailor also accepts your Fastq files, which are the raw sequence data produced by your own sequencing experiments (Video<\/em> 5<\/a>).\u00a0SraTailor produces not only BigWig files but, optionally, also BAM and peak-call BED files. Also available is to process with command-line-like optional settings (Video<\/em> 4<\/a>).<\/p>\n SraTailor is a\u00a0free<\/strong>\u00a0software and runs on\u00a0Mac<\/strong>,\u00a0Windows<\/strong>, and\u00a0Ubuntu<\/strong>!<\/p>\n NOTE!! (September 23, 2016)<\/strong> (1) What is SraTailor?<\/a> (\u25ba01:22) 1) Oki et al.<\/em> (2014). SraTailor: Graphical user interface software for processing and visualizing ChIP-seq data.\u00a0Genes Cells.\u00a0<\/em>Link<\/a> November 11, 2017<\/strong> December 06, 2015<\/strong> Munehira Y, et al. Systematic analysis of known and candidate lysine demethylases in the regulation of myoblast differentiation. J Mol Biol<\/em>. 2016. PMID: 27732873<\/a>.<\/p>\n Fujita K, et al. CHD7, Oct3\/4, Sox2, and Nanog control FoxD3 expression during mouse neural crest-derived stem cell formation. FEBS J<\/em>. 2016. PMID: 27579714<\/a>.<\/p>\n Fujikawa D, et al. Polycomb-dependent epigenetic landscape in adult T-cell leukemia. Blood<\/em>. 2016. PMID: 26773042<\/a>.<\/p>\n Okamoto R, et al. Sixteen additional enhancers associated with the chicken Sox2 locus outside the central 50-kb region. Dev Growth Differ<\/em>. 2015. PMID: 25431100<\/a>.<\/p>\n Bengtsen M, et al. c-Myb Binding Sites in Haematopoietic Chromatin Landscapes. PLoS One<\/em>. 2015. PMID: 26208222<\/a>.<\/p>\n","protected":false},"excerpt":{"rendered":" SraTailor is no longer managed. Thank you for using the service. SraTailor is a simple GUI software for visualizing published ChIP-seq raw data (Video 1). Main function of SraTailor is to convert\u00a0SRAs\u00a0into\u00a0BigWig\u00a0files. \u00a0 SRAs: High-throughput sequence raw data deposited in public databases. \u00a0 BigWig: Suitable format for graphically visualizing with genome browser. Much simple usage is one of the most remarkable features of SraTailor.\u00a0For example, SraTailor makes BigWig file\u00a0only by entering an accession number of SRA of\u00a0published ChIP-seq data.\u00a0Resultant BigWig file allows you to view the protein occupancy at the genomic position of interest (Video\u00a02). Setup of SraTailor is much easy and simple (Video 3). As input,\u00a0SraTailor also accepts your…\u7d9a\u304d\u3092\u8aad\u3080<\/a><\/p>\n","protected":false},"author":1,"featured_media":217,"parent":0,"menu_order":8,"comment_status":"open","ping_status":"closed","template":"page_sra_tailor.php","meta":{"footnotes":""},"class_list":["post-147","page","type-page","status-publish","has-post-thumbnail","hentry"],"_links":{"self":[{"href":"https:\/\/www.lab.med.kyushu-u.ac.jp\/devbio\/wp-json\/wp\/v2\/pages\/147","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.lab.med.kyushu-u.ac.jp\/devbio\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.lab.med.kyushu-u.ac.jp\/devbio\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.lab.med.kyushu-u.ac.jp\/devbio\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.lab.med.kyushu-u.ac.jp\/devbio\/wp-json\/wp\/v2\/comments?post=147"}],"version-history":[{"count":107,"href":"https:\/\/www.lab.med.kyushu-u.ac.jp\/devbio\/wp-json\/wp\/v2\/pages\/147\/revisions"}],"predecessor-version":[{"id":37967,"href":"https:\/\/www.lab.med.kyushu-u.ac.jp\/devbio\/wp-json\/wp\/v2\/pages\/147\/revisions\/37967"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.lab.med.kyushu-u.ac.jp\/devbio\/wp-json\/wp\/v2\/media\/217"}],"wp:attachment":[{"href":"https:\/\/www.lab.med.kyushu-u.ac.jp\/devbio\/wp-json\/wp\/v2\/media?parent=147"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}
\n\u00a0 SRAs<\/strong>: High-throughput sequence raw data deposited in public databases.
\n\u00a0 BigWig<\/strong>: Suitable format for graphically visualizing with genome browser.<\/p>\n![](\"https:\/\/www.lab.med.kyushu-u.ac.jp\/wp-content\/uploads\/sites\/15\/2014\/02\/icon-e1391677086588.png\" "\\"Download"){kind=icon}
<\/a><\/p>\n
\nHow to run SraTailor on macOS Sierra? (see PDF instruction<\/a>)<\/p>\nVideo Introduction<\/h3>\n
\n(2) Basic Usage<\/a> (\u25ba02:06)
\n(3) Preparation of genome libraries<\/a> (\u25ba00:29)
\n(4) Advanced usage<\/a> (\u25ba02:11)
\n(5) My files as input<\/a> (\u25ba00:48)<\/p>\nReferences<\/h3>\n
\n2) \u6c96 \u771f\u5f25 (2014) SraTailor: \u8ab0\u3067\u3082\u4f7f\u3048\u308bChIP-seq\u30c7\u30fc\u30bf\u306e\u53ef\u8996\u5316\u30c4\u30fc\u30eb. \u5b9f\u9a13\u533b\u5b66<\/em> (in Japanese) Link<\/a><\/p>\nNews!<\/h3>\n
\nSraTailor ver 1.0.7 is now available. (Download<\/a>;\u00a0ChangeLog<\/a>)
\nTo update your SraTailor, see\u00a0here<\/a>.<\/p>\n
\nChIP-Atlas<\/a>: comprehensive and integrative database for almost all published ChIP-seq data is opened.<\/p>\nCited by<\/h3>\n